PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00057.23
Common NameAMTR_s00057p00042800, LOC18445083
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family CAMTA
Protein Properties Length: 910aa    MW: 102683 Da    PI: 6.8662
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00057.23genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1157.52.6e-49411554117
                                     CG-1   4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhek 72 
                                              e ++rwl+++ei+aiL n++ ++++ ++ + p++g+++L++rk++r+frkDG+ wkkk+dgktvrE+he+
  evm_27.model.AmTr_v1.0_scaffold00057.23  41 EaTTRWLRPNEIHAILSNYKLFNVHVKPLDSPENGTIVLFDRKMLRNFRKDGHVWKKKQDGKTVREAHEQ 110
                                              5489****************************************************************** PP

                                     CG-1  73 LKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylev 117
                                              LKvg+ e +++yYah+ ++p+f rr+ywlL++e+ +ivlvhy+++
  evm_27.model.AmTr_v1.0_scaffold00057.23 111 LKVGNAERIHVYYAHGLDKPKFARRSYWLLDSEHAHIVLVHYRDT 155
                                              ******************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143765.99335161IPR005559CG-1 DNA-binding domain
SMARTSM010761.8E-6438156IPR005559CG-1 DNA-binding domain
PfamPF038592.3E-4441154IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.105.0E-4359446IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.48E-13360446IPR014756Immunoglobulin E-set
PfamPF018332.4E-4360445IPR002909IPT domain
Gene3DG3DSA:1.25.40.204.1E-15548661IPR020683Ankyrin repeat-containing domain
CDDcd002041.75E-14548658No hitNo description
SuperFamilySSF484033.51E-15557661IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.831566670IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.327599631IPR002110Ankyrin repeat
SMARTSM002480.0013599628IPR002110Ankyrin repeat
PfamPF136375.2E-5601658No hitNo description
SMARTSM002482500638667IPR002110Ankyrin repeat
SuperFamilySSF525404.78E-6735812IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500966.65746772IPR000048IQ motif, EF-hand binding site
PfamPF006120.17746762IPR000048IQ motif, EF-hand binding site
SMARTSM000154.2761783IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.078762791IPR000048IQ motif, EF-hand binding site
SMARTSM000150.21784806IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.615785809IPR000048IQ motif, EF-hand binding site
PfamPF006120.0018787805IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 910 aa     Download sequence    Send to blast
MKTQGLSRRD LLEGSEDCLL GSEIHGFRTL EELQIGKIPT EATTRWLRPN EIHAILSNYK  60
LFNVHVKPLD SPENGTIVLF DRKMLRNFRK DGHVWKKKQD GKTVREAHEQ LKVGNAERIH  120
VYYAHGLDKP KFARRSYWLL DSEHAHIVLV HYRDTSEDTA NGTISSRKES KEAFSLLGRP  180
RALHLSPSTP STSSSGSSYL DQPVISSEEN NPGADSTAYK SAEMGNQFLG AGETRNFESI  240
IHEINTYEWD DLLGILNTAP DEGRDLSSER AQCDQKDSVA IVNDVLLSNT EGRHASHLMD  300
SNFKRNCVDQ EAVNQYTQSA PSETLINDDA LQPQDTYNTI MNYVQNNPPG SPGQGQVFYI  360
TDISPAWAFA TEETKVIVTG YLLETQATLE ELNWFCVIGD VTVPAEIIQP GVLRFIAPPH  420
SSGVYDFYLT LDCRTPSSQV YSFEYRPFSS NQVNNIGFSP KVDELEWDDF DVQVRLAHLL  480
FSTTKGLAVL YSKETPKAMR EARRFSSLIS SYEKEWTSLL KSTKSKNISL SQAKSNLMEL  540
TLKGKLWEWL LETVVEGRRP AVKDSHGQGV IHLCAILGYA WAIYPISASG MSINFRDASG  600
WTALHWAAYC GREQMAAVLL STGANASLVS DPTPDCPGGC TAADLALRKG FEGMAAYLGE  660
KALTAHFRDM HISGHLGSSD EASLENTNDT QNLTEEELCI RDSMAAIRTA ANAASQIQAA  720
FREHSFNLRI KAVQLAKPDY EWAIISAMKI QNAYRAHSQR KRTAAAVRIQ HRFRTWKIRR  780
EFLNMRRQVI KIQAIFRGYQ VRRQYCKILW SVGILEKGIL RWRQKRKGLR GLQVEPTTPV  840
EIEEDGVPVV EEDFFRIGRK LAEERVDRSF NSVQVMFQSD QARRDYRRLK LKVDAAMLEH  900
DTVHDTDQD*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006855291.10.0calmodulin-binding transcription activator 5 isoform X3
TrEMBLU5D8P30.0U5D8P3_AMBTC; Uncharacterized protein
STRINGERN167580.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP73511116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]