PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00057.235

Common Name

AMTR_s00057p00202310

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

NF-YB

Protein Properties

Length: 192aa MW: 20816 Da PI: 8.0624

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00057.235	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	176.6	2.5e-55	44	139	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwa 70 reqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrktingddl+wa evm_27.model.AmTr_v1.0_scaffold00057.235 44 REQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTINGDDLCWA 112 89***************************************************************** PP NF-YB 71 latlGfedyveplkvylkkyrelegek 97 l tlGf+dyvepl++yl+kyre+egek evm_27.model.AmTr_v1.0_scaffold00057.235 113 LQTLGFDDYVEPLRKYLHKYRETEGEK 139 **********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.2E-54	39	162	IPR009072	Histone-fold
SuperFamily	SSF47113	2.95E-41	46	150	IPR009072	Histone-fold
Pfam	PF00808	1.4E-27	49	113	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.4E-19	77	95	No hit	No description
PROSITE pattern	PS00685	0	80	96	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.4E-19	96	114	No hit	No description
PRINTS	PR00615	3.4E-19	115	133	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MVVTIGGRTS SPDSEGNGRP TNTTTTATGG ATVTATSPSE GSIREQDRLL PIANVGRIMK 60 QILPPNAKIS KEAKETMQEC VSEFISFVTG EASDKCHKEK RKTINGDDLC WALQTLGFDD 120 YVEPLRKYLH KYRETEGEKA SSSQNPGKNG QIDVKESASS FKNDNPFNFN VNHRNSSSGN 180 NGKSNQLSIP F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	2e-45	39	134	2	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020529847.1	1e-141	nuclear transcription factor Y subunit B-4
Swissprot	O82248	6e-58	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	U5D406	1e-140	U5D406_AMBTC; Uncharacterized protein
STRING	ERN16970	1e-140	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP168	17	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	2e-59	nuclear factor Y, subunit B5

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00057.235

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]