PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00057.42
Common NameAMTR_s00057p00069720
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB_related
Protein Properties Length: 260aa    MW: 29949.2 Da    PI: 4.6378
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00057.42genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.53.6e-094282248
                                             T-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                          Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqkyl 48
                                             + W++Ia++++ gRt++++k++w+++l
  evm_27.model.AmTr_v1.0_scaffold00057.42  4 E-WSLIAAYLP-GRTDNEIKNYWNSHL 28
                                             4.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.572132IPR017930Myb domain
CDDcd001672.42E-5228No hitNo description
Gene3DG3DSA:1.10.10.605.2E-12328IPR009057Homeodomain-like
SuperFamilySSF466894.21E-7332IPR009057Homeodomain-like
PfamPF002492.8E-7428IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MRKEWSLIAA YLPGRTDNEI KNYWNSHLSR RVDTWRRLNA SVPVLFHGKK FNGGGKRKGG  60
RGNKVGTRSK VGDFRERREK EGLNGFVSGE NEERGVRDPS YEGRKNSTLL TKSDEGLKDI  120
EGANREMGMV KHGQNEERCR EMGVVERESA ILSESLGLGL VGDVEREGEM MVSGDEGESL  180
LDLCNETLEL SEERELRVVS EDTERVRKML GLNQKECDMW SFDGDLGWGW DWDWDWDWDW  240
DWETGKMMGD EREEVFSWL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011627372.11e-180transcription factor MYB11
TrEMBLU5D5R60.0U5D5R6_AMBTC; Uncharacterized protein
STRINGERN167770.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.11e-11myb domain protein 111
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]