PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00057.67
Common NameAMTR_s00057p00091350
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family Nin-like
Protein Properties Length: 128aa    MW: 14589.3 Da    PI: 11.1406
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00057.67genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK68.97.1e-221371652
                                   RWP-RK 16 lpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
                                             +pi++AAk L+v+lTvLK++CR++GI+RWPhRk+ksl
  evm_27.model.AmTr_v1.0_scaffold00057.67  1 MPITQAAKVLKVGLTVLKKKCREFGIPRWPHRKMKSL 37
                                             79*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151915.733158IPR003035RWP-RK domain
PfamPF020428.1E-17137IPR003035RWP-RK domain
Gene3DG3DSA:1.10.10.105.4E-45390IPR011991Winged helix-turn-helix DNA-binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MPITQAAKVL KVGLTVLKKK CREFGIPRWP HRKMKSLQSL VQNVQELGKE DGEMGEEKIR  60
NAIKILEEQR NLMEKMPGMQ LAEKTKKLRQ ACFKANYKRR RHLNSSALSS SSSNPIFSIK  120
LARNINL*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006855335.25e-88protein RKD1
SwissprotQ9M9U91e-39RKD1_ARATH; Protein RKD1
TrEMBLU5D5U22e-87U5D5U2_AMBTC; Uncharacterized protein
STRINGERN168024e-88(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5671777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.11e-33RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]