PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00057.97
Common NameAMTR_s00057p00119300, LOC18445160
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB_related
Protein Properties Length: 105aa    MW: 11926 Da    PI: 4.0865
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00057.97genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.21.6e-125293245
                                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
                          Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                                             + ++++E+ l+++ +++lG + W++Ia +++ gRt++++k +w 
  evm_27.model.AmTr_v1.0_scaffold00057.97 52 LEFSEDEEALIIRMFRLLGER-WTLIAGRIP-GRTAEEIKQYWA 93
                                             579******************.*********.***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.62446100IPR017930Myb domain
SMARTSM007171.8E-95098IPR001005SANT/Myb domain
PfamPF002493.0E-115393IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-145394IPR009057Homeodomain-like
CDDcd001674.89E-105392No hitNo description
SuperFamilySSF466892.89E-95495IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010091Biological Processtrichome branching
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MGMTESDQSS YDISDKSQGN QEIGAMGMTE SDQSSYDISD KSQEETIQDR SLEFSEDEEA  60
LIIRMFRLLG ERWTLIAGRI PGRTAEEIKQ YWATRRSTSF QVNE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006855365.16e-70MYB-like transcription factor ETC1 isoform X1
TrEMBLU5D5X41e-68U5D5X4_AMBTC; Uncharacterized protein
STRINGERN168322e-69(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3921825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46410.13e-17MYB_related family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]