PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00057.98
Common NameAMTR_s00057p00120370
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB_related
Protein Properties Length: 98aa    MW: 11569.6 Da    PI: 4.2949
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00057.98genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.35.5e-114280545
                                             -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
                          Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                                             +++E++l+ ++ k+lG + W++Ia +++  Rt +q+ s+w+
  evm_27.model.AmTr_v1.0_scaffold00057.98 42 SEDEEDLITRLYKLLGER-WDLIAGRLP-WRTKEQVESFWR 80
                                             89****************.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.5E-73785IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-74081IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-104180IPR009057Homeodomain-like
PfamPF002499.6E-104280IPR001005SANT/Myb domain
PROSITE profilePS500906.6444283IPR017877Myb-like domain
CDDcd001679.81E-64280No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MARNGEEPRC PQENETEEQR ENEIDPTATG RRWEVDLTSE ISEDEEDLIT RLYKLLGERW  60
DLIAGRLPWR TKEQVESFWR AKTGREHQEQ QPTCNPE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006855366.21e-64MYB-like transcription factor ETC3 isoform X3
TrEMBLU5D8W42e-63U5D8W4_AMBTC; Uncharacterized protein
STRINGERN168334e-64(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3921825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01380.13e-17MYB_related family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]