PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00057.99
Common NameAMTR_s00057p00121410, LOC18445162
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family GATA
Protein Properties Length: 151aa    MW: 17284.2 Da    PI: 10.3803
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00057.99genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA66.72.5e-212761135
                                     GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                                             C+nC+ttkTplWRrgp g+k+LCnaCG++yrk+++
  evm_27.model.AmTr_v1.0_scaffold00057.99 27 CENCRTTKTPLWRRGPAGPKSLCNACGIKYRKMRR 61
                                             ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.2E-152179IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.142157IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.85E-132461No hitNo description
CDDcd002021.36E-142658No hitNo description
Gene3DG3DSA:3.30.50.101.4E-162660IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.0E-182761IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402752IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MIDTCEQESS APVETNYWKM KENLKSCENC RTTKTPLWRR GPAGPKSLCN ACGIKYRKMR  60
RTILGLGGEE RENMKKRKRY GVEGEERESI KRRSEERESI KRRKRYGVSL KLRLMPLGGE  120
VLFHKQGKPV KEVEQAAVLL MALSCGTVYS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
190104KRRSEERESIKRRKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006855367.11e-105GATA transcription factor 16 isoform X1
TrEMBLU5D3291e-104U5D329_AMBTC; Uncharacterized protein
STRINGERN168341e-104(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.14e-26GATA transcription factor 16
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]