PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00058.233
Common NameAMTR_s00058p00216470, LOC18434907
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family AP2
Protein Properties Length: 367aa    MW: 40077.4 Da    PI: 7.1297
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00058.233genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.1e-17114163155
                                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                               s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  evm_27.model.AmTr_v1.0_scaffold00058.233 114 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 163
                                               78*******************......55************************997 PP
2AP245.22.4e-14206256155
                                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                               s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ +++g
  evm_27.model.AmTr_v1.0_scaffold00058.233 206 SKYRGVTLHK-CGRWEARMGQY--L-GKKYIYLGLFDTEVEAARAYDKAAIRYNG 256
                                               89********.7******5552..1.25**********99************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-9114163IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-16114171IPR016177DNA-binding domain
PROSITE profilePS5103217.899115171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-17115171IPR001471AP2/ERF domain
SMARTSM003801.7E-31115177IPR001471AP2/ERF domain
PfamPF008472.1E-9206256IPR001471AP2/ERF domain
CDDcd000183.51E-24206266No hitNo description
SuperFamilySSF541711.24E-17206266IPR016177DNA-binding domain
PROSITE profilePS5103216.331207264IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-17207264IPR001471AP2/ERF domain
SMARTSM003803.4E-30207270IPR001471AP2/ERF domain
PRINTSPR003672.5E-6208219IPR001471AP2/ERF domain
PRINTSPR003672.5E-6246266IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MWDLNERPTL QLFAPVTVAK DNMEDSGTSN SSVVNSASEA TSSNGSCNQE AEGMVVTRQL  60
FPEFATGTVG SGSSPSSSWS SIQWLDVAAF GGTVVKDLNQ VVKKSRRGPR SRSSQYRGVT  120
FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVDADINF SLADYEEDLK  180
QMRNLTKEEF VHILRRQSTG FSRGSSKYRG VTLHKCGRWE ARMGQYLGKK YIYLGLFDTE  240
VEAARAYDKA AIRYNGREAI TNFELSLYEG EIIGDGDGAG GGGADNLDLS LGISPSSAPK  300
DSDRNTEQPG FLYSASQDIG VRTDTEPQAW GSGWTRPLHG HVPLIADAAS SGFSQNKGLF  360
VLPNLR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006845031.10.0floral homeotic protein APETALA 2
RefseqXP_020523246.10.0floral homeotic protein APETALA 2
SwissprotB8AMA91e-101AP22_ORYSI; APETALA2-like protein 2
SwissprotQ84TB51e-101AP22_ORYSJ; APETALA2-like protein 2
TrEMBLW1PGG20.0W1PGG2_AMBTC; Uncharacterized protein
STRINGERN067060.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.32e-96related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  3. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  4. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]