PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00058.243

Common Name

AMTR_s00058p00222150

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

NF-YB

Protein Properties

Length: 205aa MW: 22639.7 Da PI: 8.4411

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00058.243	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	176.9	2e-55	24	118	1	95
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllw 69 vr+qdr+lPian+srimkkv+Pan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllw evm_27.model.AmTr_v1.0_scaffold00058.243 24 VRDQDRYLPIANISRIMKKVIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLW 92 589**************************************************************** PP NF-YB 70 alatlGfedyveplkvylkkyreleg 95 a++tlGfedy++plk+yl+ yre ++ evm_27.model.AmTr_v1.0_scaffold00058.243 93 AMGTLGFEDYIDPLKIYLQIYREGDT 118 ********************9665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	8.3E-53	19	130	IPR009072	Histone-fold
SuperFamily	SSF47113	2.17E-40	27	159	IPR009072	Histone-fold
Pfam	PF00808	1.2E-27	30	94	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.9E-19	58	76	No hit	No description
PROSITE pattern	PS00685	0	61	77	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.9E-19	77	95	No hit	No description
PRINTS	PR00615	3.9E-19	96	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MADTGSPGSP ESPHSSEHTS QSNVRDQDRY LPIANISRIM KKVIPANGKI AKDAKETVQE 60 CVSEFISFIT SEASDKCQRE KRKTINGDDL LWAMGTLGFE DYIDPLKIYL QIYREGDTKG 120 SSKAGEQSGK KDNVGVPTGS NIPLGYQGQY DPGMDYINSQ VCGDFNVLVP LSILKVKKPK 180 NVMHQIKLQN NVKLWFSHPK SIFS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	1e-46	23	115	1	93	NF-YB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020523209.1	1e-115	nuclear transcription factor Y subunit B-1 isoform X2
Refseq	XP_020523210.1	1e-115	nuclear transcription factor Y subunit B-1 isoform X3
Swissprot	P25209	3e-67	NFYB_MAIZE; Nuclear transcription factor Y subunit B
TrEMBL	W1PGH0	1e-150	W1PGH0_AMBTC; Uncharacterized protein
STRING	ERN06716	1e-151	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP168	17	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53340.1	3e-66	nuclear factor Y, subunit B10

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00058.243

Publications ? help Back to Top
Li XY, et al. Evolutionary variation of the CCAAT-binding transcription factor NF-Y. Nucleic Acids Res., 1992. 20(5): p. 1087-91 [PMID:1549471] Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]