PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00059.107

Common Name

AMTR_s00059p00130960

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

Protein Properties

Length: 244aa MW: 27684.3 Da PI: 9.9711

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00059.107	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	46.5	6.6e-15	128	214	1	93
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFv 69 f+k +++s+v +l lp f++++ +k ++ +tlede+ ++++ ++ +k++ l++GW++F+ evm_27.model.AmTr_v1.0_scaffold00059.107 128 FVKPMLHSHVKVGFWLGLPVGFCKSNL-PK-NDAIITLEDEDCNEFQTNFLAQKTG----LSAGWRGFA 190 89*******************9993.32.4568***********444444....***** PP HHHT--TT-EEEEEE-SSSEE..E CS B3 70 kangLkegDfvvFkldgrsefelv 93 +++L++gD vvF+l++ +f+ + evm_27.model.AmTr_v1.0_scaffold00059.107 191 IDHELNDGDAVVFQLVKPLKFKVM 214 ************9986666444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.9E-18	122	215	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.16E-20	123	216	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.46E-22	126	215	No hit	No description
PROSITE profile	PS50863	10.997	128	219	IPR003340	B3 DNA binding domain
SMART	SM01019	9.0E-17	128	220	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.4E-13	128	215	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MAAVEPAYEE FRKQRLEENR RRMQELNLAA LSQTLKKSCP KPSPSKYCKP KTPRIDMGLV 60 EVRRSSRVAA MPAASYKEVK YEYMEMPRRI YKRRALLDRS HISDGARTKA IERAEVLQSN 120 LEPIYPSFVK PMLHSHVKVG FWLGLPVGFC KSNLPKNDAI ITLEDEDCNE FQTNFLAQKT 180 GLSAGWRGFA IDHELNDGDA VVFQLVKPLK FKVMIWLSAS VIALVDLFKA LHSSQPKVIV 240 VAY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011627763.1	1e-160	B3 domain-containing protein At3g19184
Refseq	XP_020530177.1	1e-160	B3 domain-containing protein At3g19184
Refseq	XP_020530178.1	1e-160	B3 domain-containing protein At3g19184
Swissprot	Q1G3M3	3e-65	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	U5D833	0.0	U5D833_AMBTC; Uncharacterized protein
STRING	ERN17562	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP995	16	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	3e-62	B3 family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00059.107

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]