PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00059.69
Common NameAMTR_s00059p00094730, LOC18445869
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bZIP
Protein Properties Length: 404aa    MW: 42920.4 Da    PI: 7.0628
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00059.69genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_175.38.4e-24281343163
                                              XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                   bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                              e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL+ kv++L +eN++Lk+ l++l +e++kl+se+
  evm_27.model.AmTr_v1.0_scaffold00059.69 281 ERELKRQRRKQSNRESARRSRLRKQAECEELASKVEQLNNENMTLKNDLQRLADECEKLTSEN 343
                                              89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077778.6E-32194IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165967.2E-19114247No hitNo description
Gene3DG3DSA:1.20.5.1707.5E-20275340No hitNo description
PfamPF001703.6E-21281343IPR004827Basic-leucine zipper domain
SMARTSM003383.0E-20281345IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.116283346IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-12284340No hitNo description
CDDcd147024.14E-23286336No hitNo description
PROSITE patternPS000360288303IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MGSGEEVTPV KSSKAATSNQ QELPSTPSYP DWATMQAYYG AGSTPPQAFF ASTVASSPTP  60
LPYMWGQHLM PPYGTPLPYP PMYPPGGMYP HPPMTPGTVA SAAESERRAL EGKERGPMKR  120
SKGSSGNLGL VSGKSRDGGK ATSGSANDGS QSGESGSEDS SNGSDENNSQ IDMQAARKRS  180
FDQMLVEGAQ QNHGAQYGES YPNARGQPAS NIPGSMTGKS GVTAPTTNLN IGMGMDLWNA  240
SPSGTVPMKP RPNAPGTSSA MISSTMVGRD GVPSDLWIQD ERELKRQRRK QSNRESARRS  300
RLRKQAECEE LASKVEQLNN ENMTLKNDLQ RLADECEKLT SENASLMDQL TKIYGPDALA  360
SIQSIDMNPV GFKATNAESN GHLHDALRGN NSISNGKLGS NSN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297303RRSRLRK
2297304RRSRLRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006856057.10.0G-box-binding factor 1 isoform X1
RefseqXP_011627687.10.0G-box-binding factor 1 isoform X1
RefseqXP_020530214.10.0G-box-binding factor 1 isoform X1
RefseqXP_020530215.10.0G-box-binding factor 1 isoform X1
TrEMBLU5D5300.0U5D530_AMBTC; Uncharacterized protein
STRINGERN175240.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7001767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.12e-42basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]