PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00060.14
Common NameAMTR_s00060p00054700
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NAC
Protein Properties Length: 405aa    MW: 45307.7 Da    PI: 4.7626
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00060.14genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.84.7e-3291511128
                                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev..ikevdiykvePwdLpkkvkaeekewyfFs 62 
                                              lp+G++F+P+d+el+  +L++kv  +       ++++ +   +e +i++++P++Lp  vk++ + ++fF+
  evm_27.model.AmTr_v1.0_scaffold00060.14   9 LPRGVKFDPSDQELL-GHLAAKVGVDGaklhpfIDEFIMtlYEEDGICYTHPQKLP-GVKQDGSVCHFFH 76 
                                              799************.789999877764465553333333255668**********.777888999**** PP

                                      NAM  63 krdkkyatgkrknra........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWv 122
                                              ++ k+y++g+rk+r+          + +W++tgk+++v++ +g + g+kk++v+y  +g+  k+ekt+Wv
  evm_27.model.AmTr_v1.0_scaffold00060.14  77 RTVKAYNSGTRKRRKilnhlnpcSGDVRWHKTGKTRQVIV-DGVHRGCKKIMVLYmsTGKGGKPEKTNWV 145
                                              **************87888877766889************.999***********7768888999***** PP

                                      NAM 123 mheyrl 128
                                              mh+y+l
  evm_27.model.AmTr_v1.0_scaffold00060.14 146 MHQYHL 151
                                              ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-362170IPR003441NAC domain
PROSITE profilePS5100529.6439170IPR003441NAC domain
PfamPF023659.8E-1410151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000077Biological ProcessDNA damage checkpoint
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010332Biological Processresponse to gamma radiation
GO:0040020Biological Processregulation of meiotic nuclear division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MVTQDWPGLP RGVKFDPSDQ ELLGHLAAKV GVDGAKLHPF IDEFIMTLYE EDGICYTHPQ  60
KLPGVKQDGS VCHFFHRTVK AYNSGTRKRR KILNHLNPCS GDVRWHKTGK TRQVIVDGVH  120
RGCKKIMVLY MSTGKGGKPE KTNWVMHQYH LGTEDDEKDG DFVVSKVLYQ QQLKPCEKND  180
QDMPEETAPT SVDPVDPVTP VAMVPGPFRP SKQQPDIDSL QEPKSVCEES SAQVIDPDTT  240
GENCASSQPH WDENVEDQEI NSVGDSKWWE GESQFLLDSQ QLLDGLYLCD EILQGQSLRE  300
DDRSKKVVPC LSEYTNIGAA HLKKDLESCQ NLSQSELPKI EFDQPGLRLN QLDTPLDFHL  360
SQLDTPPSDL RLSQLDTPPD FRLSQLDLPS GSQDSFLGWA SKGT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020531151.10.0SUPPRESSOR OF GAMMA RESPONSE 1 isoform X2
TrEMBLW1NK300.0W1NK30_AMBTC; Uncharacterized protein
STRINGERM958160.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP82641016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.18e-91NAC family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]