PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00060.90
Common NameAMTR_s00060p00156120
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C3H
Protein Properties Length: 185aa    MW: 20381.1 Da    PI: 8.9179
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00060.90genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.92.9e-12137163127
                                              --S---SGGGGTS--TTTTT-SS-SSS CS
                                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                              ykt +Cr +   G C+yG++C+FaHg+
  evm_27.model.AmTr_v1.0_scaffold00060.90 137 YKTDICRAWDDRGACRYGSKCQFAHGK 163
                                              9************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.66E-10135168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-17135169IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7136163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.042136164IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9137163IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MERLINYSRA LAPSDAPNRT LPRRSLSVFL GPAFDAEALR SYSCSPDLFP GNDVHRQISP  60
DIGVRKQRFS LSPVTPPSPV LPPPSYGKGK EMEEGVLVMD GLLVNTFTKQ QHKSSLMEST  120
SSSSSNGSGD WAMGTLYKTD ICRAWDDRGA CRYGSKCQFA HGKEELRPVM RFPKNKGERE  180
VEAL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020531117.11e-129uncharacterized protein LOC110008401
TrEMBLW1NJD71e-134W1NJD7_AMBTC; Uncharacterized protein
STRINGERM958921e-135(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.18e-13C3H family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]