PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00061.191
Common NameAMTR_s00061p00176360
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bZIP
Protein Properties Length: 150aa    MW: 16735.7 Da    PI: 6.391
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00061.191genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.95.1e-1495139347
                                               XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                    bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 
                                               + +r +rk+kNRe+A rsR+RK+a++ +Le  ++eL++eN +Lkk
  evm_27.model.AmTr_v1.0_scaffold00061.191  95 AERRLKRKIKNRESADRSRARKQAYTIQLECSFEELQEENARLKK 139
                                               56899*************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-993149IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.1E-1293139No hitNo description
PROSITE profilePS5021710.395139IPR004827Basic-leucine zipper domain
PfamPF001702.0E-1195139IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-1097139No hitNo description
CDDcd147071.24E-2097142No hitNo description
PROSITE patternPS000360100115IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MLSSNGPVEE TSLNISCVTH EHQIPPNASA WPQSPPSTGH MIMDSHGHGS NVASVMGNNI  60
FPWNGGLGIQ FPGENGAQLN GIGQHWEDEA LMEDAERRLK RKIKNRESAD RSRARKQAYT  120
IQLECSFEEL QEENARLKKL QVFQPFYHL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLU5DCN91e-108U5DCN9_AMBTC; Uncharacterized protein
STRINGERN191821e-109(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17770.25e-14basic region/leucine zipper motif 27
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]