PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00061.46
Common NameAMTR_s00061p00070770
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 522aa    MW: 57967.7 Da    PI: 9.6184
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00061.46genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.0018135154221
                                              EETTTTEEESSHHHHHHHHH CS
                                  zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                                              +C+ C+k+F++  +L  H+r
  evm_27.model.AmTr_v1.0_scaffold00061.46 135 VCTLCKKTFPSLKSLFGHMR 154
                                              6******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0156688IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.6816693IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM003550.03134156IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.03E-7135156No hitNo description
PROSITE patternPS000280136156IPR007087Zinc finger, C2H2
PfamPF139123.2E-9136158IPR007087Zinc finger, C2H2
SuperFamilySSF576671.03E-7406433No hitNo description
SMARTSM003550.041411433IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.619411438IPR007087Zinc finger, C2H2
PfamPF139121.4E-9411433IPR007087Zinc finger, C2H2
PROSITE patternPS000280413433IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MDRKNSDSSA SSGSGDKPSS IDGNQSTSRM KIRIKVSKKA DSQCKTSSPE SVTSQIDQVG  60
GASRHYSCKF CNLKFSSERS LGAHVKAHEK HSNYDFTDSD KMGLEDEKGR IKEGCRGERK  120
RTLEETKKKN QQEPVCTLCK KTFPSLKSLF GHMRCHPERN WRGIQPPEKP VLAGKNERKM  180
FKIFSNGETG KLPENVSSGS ISNGLSGKND RKMFKIFGNG ETGKPLENVS SGSTSNGLSE  240
KVKHSCSNGS ARKSSESSSY QTDATITEAS SKEHDHLSPL SKRDHLSPLS NWSVTGSRRR  300
NRTIAENKNL QSNKFEGVFT SSKETEVAYN LLMLSESIPL SESKPPQRNS GEDEIISTRH  360
DSKKRKLLLG VSSTNNREEE VKQEKAQDSV IGSEIPVSGD KKLPPERQGS HICTLCHKRF  420
DSGQALGGHM RRHFDREKHQ AKLKARHPQV ELGRERKNGE GEVELGGEQK NGERMEFIDL  480
NGVMPIEDED LGFAFSMVEV VPDYGAYLSS RLKERSSFHD L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020531254.10.0protein suppressor of hairy wing
TrEMBLU5DCA10.0U5DCA1_AMBTC; Uncharacterized protein
STRINGERN190370.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP706138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.14e-12C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]