PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00061.94
Common NameAMTR_s00061p00117680
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bZIP
Protein Properties Length: 119aa    MW: 13303.4 Da    PI: 11.957
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00061.94genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_124.65.5e-0889109525
                                              CHHHCHHHHHHHHHHHHHHHH CS
                                   bZIP_1   5 krerrkqkNReAArrsRqRKk 25 
                                              +r++rk  NRe+A rsR+RK+
  evm_27.model.AmTr_v1.0_scaffold00061.94  89 RRQKRKTENRESAARSRARKQ 109
                                              79******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.9E-489110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MGSKLPHCRP FVTIQPLQPV SGHLSMGLMA SVSVSVLVVV ITLKLQQSAN VRYCVNVNGN  60
GMLGNVVPNE SPVRQRRRIE RAFDDLTERR QKRKTENRES AARSRARKQV PLSDFRVH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006857619.21e-13protein ABSCISIC ACID-INSENSITIVE 5
TrEMBLU5DA633e-80U5DA63_AMBTC; Uncharacterized protein
STRINGERN190854e-81(Amborella trichopoda)
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]