PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00061.95
Common NameAMTR_s00061p00118690
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bZIP
Protein Properties Length: 148aa    MW: 16222 Da    PI: 10.1013
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00061.95genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.91.1e-13101145549
                                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 
                                              ++  rk+kNRe+A rsR+RK+a++ +L   v+eL++eN +Lk+el
  evm_27.model.AmTr_v1.0_scaffold00061.95 101 RKRQRKIKNRESAARSRARKQAYTCQLDISVAELKEENARLKNEL 145
                                              456689************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.8E-1296145No hitNo description
SMARTSM003380.00397145IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.78399145IPR004827Basic-leucine zipper domain
PfamPF001703.0E-11100145IPR004827Basic-leucine zipper domain
CDDcd147072.49E-17101142No hitNo description
SuperFamilySSF579593.88E-9101145No hitNo description
PROSITE patternPS000360105119IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MEYTQTNGSS PTTNGVQTAA SLSIWQQSNP SNNLMLPFEQ GSYGAGIGGS HSHGGGVDIS  60
NVIYFNNVNG NGVLGNVVRN GGQVPRRRRN VMEALEELEE RKRQRKIKNR ESAARSRARK  120
QAYTCQLDIS VAELKEENAR LKNELVF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006857619.21e-104protein ABSCISIC ACID-INSENSITIVE 5
TrEMBLU5D0G91e-103U5D0G9_AMBTC; Uncharacterized protein
STRINGERN190861e-104(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10063711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35900.11e-13bZIP family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]