PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00063.98
Common NameAMTR_s00063p00216020, LOC18444621
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family Trihelix
Protein Properties Length: 225aa    MW: 25212.8 Da    PI: 10.7349
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00063.98genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.62.1e-1526109186
                                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspk...qCkekwenlnkrykkike 66 
                                              +W++  + +L+ a+++++ + +r+klk ++W++v++++++rg  +r pk   qCk+k+e++++ry+ +  
  evm_27.model.AmTr_v1.0_scaffold00063.98  26 EWSDGAISTLLGAYQSKWVQRNRAKLKSQDWADVARHVSSRGAsSRAPKtltQCKNKIESMKRRYRSESS 95 
                                              5*************************************777764665543339*************9876 PP

                                 trihelix  67 gekkrtsessstcpyfdqle 86 
                                              +        +st+p+f++l+
  evm_27.model.AmTr_v1.0_scaffold00063.98  96 SGA------VSTWPLFHRLD 109
                                              655......579*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-1924109No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MASIAPQSEP NGRTRPEPTA RPRRDEWSDG AISTLLGAYQ SKWVQRNRAK LKSQDWADVA  60
RHVSSRGASS RAPKTLTQCK NKIESMKRRY RSESSSGAVS TWPLFHRLDL LLRCSKAEAN  120
GEEGKIPASQ EIPAKIPAKY ELMSEKKRKG AASWVMEALM SLEERERKAM REIERVRAEL  180
EAKRVEMEKK ETAIMASTQL EIEKLISDGR KNGRKSTGKG MAAN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006854849.11e-161trihelix transcription factor ASIL2
TrEMBLU5CST71e-160U5CST7_AMBTC; Uncharacterized protein
STRINGERN163161e-161(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP44091421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-52sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]