PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00065.59
Common NameAMTR_s00065p00106090, LOC18446922
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bZIP
Protein Properties Length: 150aa    MW: 17501.1 Da    PI: 10.4417
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00065.59genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.82.4e-134294557
                                             CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                   bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57
                                             kr+rrk +NR++ArrsR RK++ ++ L+  v  L+  N++L+ ++   +++ +
  evm_27.model.AmTr_v1.0_scaffold00065.59 42 KRQRRKLSNRLSARRSRMRKQQHLDDLRHTVSRLSYGNDELARRVALASDHLS 94
                                             9****************************************999877776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.3E-1338102IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.0E-123994No hitNo description
PROSITE profilePS5021710.56540103IPR004827Basic-leucine zipper domain
PfamPF077164.9E-104088IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.27E-114292No hitNo description
CDDcd147025.11E-174394No hitNo description
PROSITE patternPS0003604560IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MLKPLQPIPK PHFSSLPLKT THVEDHPNPP QNHHPISLLD EKRQRRKLSN RLSARRSRMR  60
KQQHLDDLRH TVSRLSYGND ELARRVALAS DHLSRVIVEN ERLRLEYGVL RKRLSDYCHN  120
LVLREIEISC NGDYFTGDFH VPFAQVSMI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15461RRSRMRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLU5D8N11e-104U5D8N1_AMBTC; Uncharacterized protein
STRINGERN185551e-105(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8744815
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04038.12e-16basic leucine-zipper 48
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]