PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00066.230
Common NameAMTR_s00066p00183410
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 166aa    MW: 18865.2 Da    PI: 5.3205
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00066.230genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.62.9e-051421611029
                                               HHHHHHHHHHHHHHHCTSCC CS
                                       HLH  10 rrRRdriNsafeeLrellPk 29 
                                               rrRR+riN ++  L++l+P+
  evm_27.model.AmTr_v1.0_scaffold00066.230 142 RRRRERINARLRILQSLIPN 161
                                               9******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.039132165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.96E-5135163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-4142162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MEPNEELQAF DVYDFRAILA SNEYSLLNND FLCNGEEDGP NLEITVSSKH EHSLGAFHML  60
PMEDMAMEDS SLDGHNYMGN NEIIQNFQGL DGHLGAILKR ETYERNTKPE LKKTQKFKLE  120
GRECINNGKG SSAIDPQCFY ARRRRERINA RLRILQSLIP NGTKV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020532043.11e-121transcription factor bHLH66
TrEMBLU5DCQ21e-119U5DCQ2_AMBTC; Uncharacterized protein
STRINGERN203141e-120(Amborella trichopoda)
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]