PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00066.242
Common NameAMTR_s00066p00190730, LOC18448736
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bZIP
Protein Properties Length: 389aa    MW: 42983.8 Da    PI: 7.2577
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00066.242genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1331.3e-10202260563
                                               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                    bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                               kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l +l+     l++e+
  evm_27.model.AmTr_v1.0_scaffold00066.242 202 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLTMLQRDTNGLTAEN 260
                                               9**********************************************999888887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.5E-15198262IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.955200263IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.03E-11202253No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-10202256No hitNo description
PfamPF001708.3E-9202254IPR004827Basic-leucine zipper domain
CDDcd147031.20E-22203252No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEKDKSPSPS GLPPPPSGRY AAFPSPTNAF TVKRESSPAP APSPASQISP SLSPSRSDTQ  60
MPDSTGFSHD INRMSEFPPR ARGHRRAHSE IAVRLPDDIV FDRALGPDCP ALSDETDEDF  120
FSMYIDMEKF GAAELTGGPI QGEAESSERM RPRHQHSQSM DGSTTSSIKP EALVGSEGPS  180
LAETKKAMSA AKLADLALLD PKRAKRIWAN RQSAARSKER KMRYIAELER KVQTLQTEAT  240
TLSAQLTMLQ RDTNGLTAEN SELKLRLQTM EQQVHLQDAL NDALREEVQR LKLATGQAMS  300
NGAPLMNFGS SFGGNQQFYP HNQSVHTMLA AHQFQQLHIH SQHQHQQQQQ QQPQQHQQQQ  360
TVDLRSKGAI SSQNQRENIS EFNTGSKE*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00126DAPTransfer from AT1G06070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011628735.10.0transcription factor RF2a
RefseqXP_011628736.10.0transcription factor RF2a
RefseqXP_011628737.10.0transcription factor RF2a
SwissprotQ040881e-114POF21_ARATH; Probable transcription factor PosF21
TrEMBLU5D3Y50.0U5D3Y5_AMBTC; Uncharacterized protein
STRINGERN203260.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-105bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  3. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]