PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00067.108

Common Name

AMTR_s00067p00126920

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

LBD

Protein Properties

Length: 99aa MW: 11151.7 Da PI: 6.7161

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00067.108	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	41	5.4e-13	1	56	46	101
DUF260 46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 ++++p ++r++a++++v+eA+ r +dPv+G+v i+kl +q++ ++++la++k++l evm_27.model.AmTr_v1.0_scaffold00067.108 1 MQKVPIDKRSEAAECMVFEAHSREQDPVHGCVHQISKLFHQISLAQQDLAMVKAQL 56 5789999********************************************99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.09	1	56	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-11	1	53	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 99 aa Download sequence Send to blast
MQKVPIDKRS EAAECMVFEA HSREQDPVHG CVHQISKLFH QISLAQQDLA MVKAQLAILK 60 AQHFQQQIQQ QQHASSLSEL YNLHHSLTEF ISIPDLAP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	U5DEK8	2e-63	U5DEK8_AMBTC; Uncharacterized protein
STRING	ERN18843	4e-64	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-11	LBD family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00067.108

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]