PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00068.120
Common NameAMTR_s00068p00166340
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 180aa    MW: 20443.7 Da    PI: 8.2083
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00068.120genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.61.9e-071257653
                                              HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHH CS
                                       HLH  6 nerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIks 53
                                              + +E+ RR +++  f++L  l P++   +sk   s  + L +++eYIk+
  evm_27.model.AmTr_v1.0_scaffold00068.120 12 KTIEKLRRMNMKALFSKLMALTPQQ---SSKEaISMPDRLGEVIEYIKN 57
                                              789*********************8...56666**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.95658IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-9875IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-81076IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MEHQGSAKPE RKTIEKLRRM NMKALFSKLM ALTPQQSSKE AISMPDRLGE VIEYIKNFEK  60
NIEVLKEERD MLKKKGVKIE EEEGVGVRKN SYLPIIKVQA LGSSVEVSIV VEVCSSDRFR  120
IHDVVLALQE EGAEIVNANF NTMDDKMIAV LHCQVSDYRV GFDTGRVYEK LRTLVQRSL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006859019.21e-129uncharacterized protein LOC18448902
TrEMBLU5D4F21e-127U5D4F2_AMBTC; Uncharacterized protein
STRINGERN204861e-128(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.17e-21bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]