PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00069.147
Common NameAMTR_s00069p00171910, LOC18447809
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family TCP
Protein Properties Length: 409aa    MW: 43316.5 Da    PI: 6.6605
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00069.147genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.54.2e-37802042103
                                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..... 65 
                                               ag++++ +++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl qa+pai+++tgt     
  evm_27.model.AmTr_v1.0_scaffold00069.147  80 AGRRSSGKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETITWLLHQAEPAIIAATGTgtvpa 148
                                               8999************************************************************88888 PP

                                       TCP  66 ............ssssaseceaesssssasnsssg.....kaaksaa.kskksqks 103
                                                           +s +++ c ++sss   ++ + +     ++ ++ + k++k +++
  evm_27.model.AmTr_v1.0_scaffold00069.147 149 iavqvggsfkipTSAPSTMCPSSSSSHIIDTTKTNpsllgHEVSAPPkKRNKLSED 204
                                               88888777777644455555333333333322222456642222222122222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.6E-3185192IPR005333Transcription factor, TCP
PROSITE profilePS5136926.7386140IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MDSKQELEEE EDTKRNPAMA IPNHPPPQHQ HPTTTTPRER ETTTTIAYMK EEPEPGPEPE  60
TLAMVASAET ENLTVAKRSA GRRSSGKDRH TKVEGRGRRI RMPATCAARI FQLTRELGHK  120
SDGETITWLL HQAEPAIIAA TGTGTVPAIA VQVGGSFKIP TSAPSTMCPS SSSSHIIDTT  180
KTNPSLLGHE VSAPPKKRNK LSEDKSSMGH PHLEEATASI GFFAPSSLSP PATTTGIGVQ  240
GGLVPVWAVG GERLVPSAMP LNHQYHHHIW MVPVNAQAGS LATQQWGFAS PPLLSQPAMT  300
QGLVSMVGGV RPLVSASLFG GGSMVMPQFN QHPLSSDGVA SSSLESQRPP PPPLPTVDGS  360
GSSSCLEMGG GSFLEGRSEK AEHQFMGGSR SREEEEGGRH GRSENAED*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00316DAPTransfer from AT2G45680Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006857957.10.0transcription factor TCP9
SwissprotA2YXQ14e-43PCF2_ORYSI; Transcription factor PCF2
SwissprotQ6ZBH64e-43PCF2_ORYSJ; Transcription factor PCF2
TrEMBLU5DA900.0U5DA90_AMBTC; Uncharacterized protein
STRINGERN194240.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP31781129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.12e-42TCP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]