PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00071.121
Common NameAMTR_s00071p00136090
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 477aa    MW: 55262.1 Da    PI: 8.5769
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00071.121genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000841336123
                                              EEETTTTEEESSHHHHHHHHHH.T CS
                                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                                              y C +Cg + s ks+ ++H+ + H
  evm_27.model.AmTr_v1.0_scaffold00071.121 13 YYCDICGICRSKKSLIRSHMLSeH 36
                                              89******************9988 PP
2zf-C2H215.45.2e-056080323
                                              ETTTTEEESSHHHHHHHHHHT CS
                                   zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                                              C+ Cg +F+ + +Lk+H + H
  evm_27.model.AmTr_v1.0_scaffold00071.121 60 CEECGACFRKPAHLKQHKQGH 80
                                              *****************9877 PP
3zf-C2H215.26.3e-05183207123
                                               EEET..TTTEEESSHHHHHHHHHHT CS
                                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                               ++C+   C+ s++rk++L+rH+ +H
  evm_27.model.AmTr_v1.0_scaffold00071.121 183 FTCHvdGCHSSYRRKDHLTRHLLKH 207
                                               89*********************99 PP
4zf-C2H214.50.0001212236123
                                               EEET..TTTEEESSHHHHHHHHHHT CS
                                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                               ++Cp  +C+  F+ + n krHi  H
  evm_27.model.AmTr_v1.0_scaffold00071.121 212 FECPvdNCNHKFTYQGNVKRHIEEH 236
                                               89********************995 PP
5zf-C2H216.22.9e-05252276123
                                               EEET..TTTEEESSHHHHHHHHHHT CS
                                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                               ++C+   Cgk F+  s L++H  +H
  evm_27.model.AmTr_v1.0_scaffold00071.121 252 HVCQepECGKAFKYESKLRKHEESH 276
                                               689999***************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.19E-51180No hitNo description
SMARTSM00355131336IPR015880Zinc finger, C2H2-like
SMARTSM003550.125880IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.0095885IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.2E-45984IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.5E-7180207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.05183207IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280185207IPR007087Zinc finger, C2H2
SuperFamilySSF576671.72E-5210238No hitNo description
Gene3DG3DSA:3.30.160.607.2E-6210239IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.013212236IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.032212241IPR007087Zinc finger, C2H2
PROSITE patternPS000280214237IPR007087Zinc finger, C2H2
SuperFamilySSF576672.99E-5248277No hitNo description
Gene3DG3DSA:3.30.160.609.3E-7251276IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.065252276IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.635252281IPR007087Zinc finger, C2H2
PROSITE patternPS000280254276IPR007087Zinc finger, C2H2
SMARTSM003555.7284309IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.725285309IPR007087Zinc finger, C2H2
PROSITE patternPS000280286309IPR007087Zinc finger, C2H2
SMARTSM0035512312333IPR015880Zinc finger, C2H2-like
SMARTSM003550.019342367IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.575342372IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-4343368IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280344367IPR007087Zinc finger, C2H2
SuperFamilySSF576671.22E-6353397No hitNo description
SMARTSM003555.2373397IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.162373397IPR007087Zinc finger, C2H2
PROSITE patternPS000280375397IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MEGEVIFKDI RRYYCDICGI CRSKKSLIRS HMLSEHKDDV NEVQKDEEEI LESKRLKLAC  60
EECGACFRKP AHLKQHKQGH SLERRRSFAA RVIAKGTAAR FIEVVGFQDL SKPCEALDPM  120
YRTPKCEGVV LVLNGLVSEW ETTCEAPSSN YLSTLFTRNI SKRLRTYMEV LIYVQLQLLQ  180
RSFTCHVDGC HSSYRRKDHL TRHLLKHENK LFECPVDNCN HKFTYQGNVK RHIEEHHGED  240
SPSCGRQNRL PHVCQEPECG KAFKYESKLR KHEESHVELD SVEVICCDPE CMKHFTNIEA  300
LKDHLKSNHR YVPCEVCGSR QLKKNMKRHL RTHDNKVSIE RIKCPVRGCC HIFTTISNLK  360
KHEKAVHLEL RPFTCREPHC GRKFPYKHVR DNHEKSHVYI HDDFVELDEQ FRSRPRGGRK  420
PLFSGIESLL RKRVAPPNRA SSLDNASEYL RSLLSEDVSE FSDNTQSRGT AAVSGV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1321327LKKNMKR
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011628585.10.0transcription factor IIIA
SwissprotQ84MZ42e-90TF3A_ARATH; Transcription factor IIIA
TrEMBLU5DBS30.0U5DBS3_AMBTC; Uncharacterized protein
STRINGERN199740.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29811627
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.17e-93transcription factor IIIA
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]