PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00071.86
Common NameAMTR_s00071p00111940
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 221aa    MW: 24563.9 Da    PI: 7.6474
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00071.86genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH284.1e-09123163954
                                              HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                      HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                               r RR++i +++  L++l+P       +K++ a++Le+A++Y+k L
  evm_27.model.AmTr_v1.0_scaffold00071.86 123 ARHRREKISQRIRILQRLVPGG-----TKMDTASMLEEAIHYVKFL 163
                                              699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.205114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-14115173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.34E-12116168No hitNo description
SuperFamilySSF474591.19E-14118176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-14120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-6124163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MRERFQPWSK PLLDQIPFEL SHKEDCIPHS NPQQFSYHNH CFNPETPSDL IAGRMHCDVE  60
REGNIGTLME SQGHVERDDD VGAIKEMMYR IAAMRPVDID PISIPKPQRR NVRISKDPQS  120
VAARHRREKI SQRIRILQRL VPGGTKMDTA SMLEEAIHYV KFLKKQVQEL QSNQCSPSGG  180
GGHLGPIHWS IAHDLMPPGA STASAGAPGA INSGISGYCD *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006858472.31e-165transcription factor HEC1
TrEMBLU5DBN41e-163U5DBN4_AMBTC; Uncharacterized protein
STRINGERN199391e-164(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.14e-41bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]