PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00072.24

Common Name

AMTR_s00072p00055370, LOC18426404

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

NZZ/SPL

Protein Properties

Length: 293aa MW: 32512.4 Da PI: 7.9044

Description

NZZ/SPL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00072.24	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NOZZLE	23.3	1.1e-07	29	74	37	82
NOZZLE 37 tetkksrgrkpgsktaqqkqkkptlrgmgvaklerfiieeekkklv 82 ++ +srgrk +++ qkk rg+gva+ler +++e+++k + evm_27.model.AmTr_v1.0_scaffold00072.24 29 PDQGRSRGRKSKINASGSSQKKVPQRGLGVAQLERLRLQEQRRKQA 74 55679**********************************9998865 PP

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MATTLLLWSP SGSPPPDDQT NDQDQENQPD QGRSRGRKSK INASGSSQKK VPQRGLGVAQ 60 LERLRLQEQR RKQADSEQAS PFPAFPGNVS FIERHNAVNF PNRLAPMSCG GLTERHMALT 120 DVVQRYRLRN GMRPGVTEPF GSERVPVNDM RFHNPTPFRS ESIRLKELSS NQSPVCWSDQ 180 CEYCLKRKRE FYGINMGAAS KEGCDFLGLA LWNAKNVEGE AARDIMHVHT GMAIHEGGET 240 VTLQRSRGRE LMEYDFLGGD APLRGGDGSS SYEPPYPEPS SSFLDLSLKL ST*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006833114.1	0.0	uncharacterized protein LOC18426404
TrEMBL	W1NRB7	0.0	W1NRB7_AMBTC; Uncharacterized protein
STRING	ERM98392	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP10655	2	2

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00072.24
Entrez Gene	18426404

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]