PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00073.13
Common NameAMTR_s00073p00053850
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family FAR1
Protein Properties Length: 130aa    MW: 15040.8 Da    PI: 5.9595
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00073.13genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.86.2e-1260117154
                                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrt 54 
                                              kfYn+YA++ GFs+r  + +k k+n+   kr++vC k gk+ +++++     ++ + ++
  evm_27.model.AmTr_v1.0_scaffold00073.13  60 KFYNAYAQRKGFSIRLVRPRKDKDNN-LRKRDYVCLKDGKNLSSTNNkgrmqSNVKGTQ 117
                                              6*****************99996666.**************999998444332222234 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-960125IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MDQDEFYKNK FMDVSYDNVI ATGDGEDIKV PLFCDQQDNS EHQKDLFIGM DFEYEDVVNK  60
FYNAYAQRKG FSIRLVRPRK DKDNNLRKRD YVCLKDGKNL SSTNNKGRMQ SNVKGTQDER  120
GKVGCNEIC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW1NRI12e-89W1NRI1_AMBTC; Uncharacterized protein
STRINGERM973143e-90(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.22e-08FAR1 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]