PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00073.4
Common NameAMTR_s00073p00033500, LOC18425278
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family HSF
Protein Properties Length: 342aa    MW: 37899.7 Da    PI: 7.0291
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00073.4genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.28.4e-36251162102
                                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTT CS
                            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekks 72 
                                             Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++   
  evm_27.model.AmTr_v1.0_scaffold00073.4  25 FLTKTYQLVDDPSTDHIVSWGEDHSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR--- 92 
                                             9*****************************************************************99... PP

                                             TTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
                            HSF_DNA-bind  73 kskekiweFkhksFkkgkkellekikrkks 102
                                                   weF++++F+kg+k+ll++i+r+k+
  evm_27.model.AmTr_v1.0_scaffold00073.4  93 ------WEFANEYFRKGEKQLLCEIHRRKT 116
                                             ......**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-3815109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.4E-5921114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.58E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.1E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDILVENCEG IMLSVESHKS VPAPFLTKTY QLVDDPSTDH IVSWGEDHST FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEYF RKGEKQLLCE IHRRKTPHHP  120
PQALLPFAPR LMAPPSPFMD SDDRGMWCDS TSESSSPSPP LLSNGAGTVS ALSEDNERLR  180
RSNSMLLSEL AYMRKLYNDI IYFVQNHVVP VAPSNASSSR LIEPSSSLTH VNARAGFTLL  240
GSHRCHTNNT CSTSGSSVTV VEESKPRLFG VPLQANKRPH PDPSPDDVAT CASTTAPPHK  300
WARGLVETVS VLSKEDDLAL NLKPPSVSSS SPTHLKLDAP A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-232011625131Heat shock factor protein 1
5d5v_B8e-232011625131Heat shock factor protein 1
5d5v_D8e-232011625131Heat shock factor protein 1
5hdg_A5e-23211167112Heat shock factor protein 1
5hdn_A5e-23211167112Heat shock factor protein 1
5hdn_B5e-23211167112Heat shock factor protein 1
5hdn_C5e-23211167112Heat shock factor protein 1
5hdn_D5e-23211167112Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006829889.10.0heat stress transcription factor B-4
SwissprotQ9C6351e-101HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLW1NQR10.0W1NQR1_AMBTC; Uncharacterized protein
STRINGERM973050.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.13e-93heat shock transcription factor B4
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]