PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00074.126
Common NameAMTR_s00074p00199180
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C2H2
Protein Properties Length: 224aa    MW: 24901.2 Da    PI: 9.8378
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00074.126genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.000914365123
                                              EEETTTTEEESSHHHHHHHHHHT CS
                                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                              y+C+ C+  F +k +L  H + H
  evm_27.model.AmTr_v1.0_scaffold00074.126 43 YSCKLCNLKFGSKQSLGAHVKAH 65
                                              99*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.04E-64265No hitNo description
SMARTSM003550.0344365IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8894370IPR007087Zinc finger, C2H2
PfamPF139120.0024365IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
SuperFamilySSF576671.04E-6105132No hitNo description
SMARTSM003550.26110132IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
PfamPF139121.3E-6112134IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEPSISDFSN SSGSEAKPVS IDGNQSTPRL TIRLKLPGVL GRYSCKLCNL KFGSKQSLGA  60
HVKAHASNYG FTDSDKIGLK DEHERRKDGC RGESKSTILE KTTKHTQQEP VCALCTKKFP  120
SMKALFGHMR CHPKRDCRGI QPQEKPVIAR KNERNLQVKY SSNGAQMNSV ESLSYHTNST  180
ITEESSKEHY PLSPLSNWLV TGSGARKNKT TWSESKDCIL FMY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020520271.11e-138LOW QUALITY PROTEIN: uncharacterized protein LOC18429799
TrEMBLW1NN581e-166W1NN58_AMBTC; Uncharacterized protein
STRINGERM970081e-167(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP706138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.12e-10C2H2 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]