PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00074.32
Common NameAMTR_s00074p00109750
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C3H
Protein Properties Length: 202aa    MW: 22215.1 Da    PI: 7.7796
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00074.32genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.11.4e-135882226
                                             -S---SGGGGTS--TTTTT-SS-SS CS
                                  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                                             ++++C+++++tG Ck+G++Ck++H+
  evm_27.model.AmTr_v1.0_scaffold00074.32 58 DQPECQYYMKTGDCKFGASCKYHHP 82
                                             689*********************9 PP
2zf-CCCH37.92.9e-12103127125
                                              --S---SGGGGTS--TTTTT-SS-S CS
                                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                                              ++++lC f++++G+Ck+G++CkF H
  evm_27.model.AmTr_v1.0_scaffold00074.32 103 PGQPLCTFYSKYGICKFGPTCKFDH 127
                                              589********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.4E-65683IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.8265684IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-115882IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-65984IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-56282IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6101128IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-6102129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.699102130IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9104127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4107127IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MAYTTKNPGS PLASSDGSNV VYMQSTEPAS SGPMRMPSPF VHQLLPALQN GLFPERPDQP  60
ECQYYMKTGD CKFGASCKYH HPLERAMPLT NCALGPLGLP LRPGQPLCTF YSKYGICKFG  120
PTCKFDHTVV APLNYGFPNV STPEMPPVYQ LSRTTHTERP SSENSSPNAS NHEQKRQRQI  180
LRPEPSEVDQ LKASSDDVIP Q*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011629168.11e-139zinc finger CCCH domain-containing protein ZFN-like isoform X1
TrEMBLW1NQ591e-147W1NQ59_AMBTC; Uncharacterized protein
STRINGERM969141e-147(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1375334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.33e-28zinc finger nuclease 3
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]