PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00077.51
Common NameAMTR_s00077p00070990
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bZIP
Protein Properties Length: 357aa    MW: 39490.8 Da    PI: 5.9421
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00077.51genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.15e-10162211554
                                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                                              kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  +l   + 
  evm_27.model.AmTr_v1.0_scaffold00077.51 162 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQR 211
                                              9****************************************998876655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-13158229IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.565160223IPR004827Basic-leucine zipper domain
PfamPF001701.3E-8162213IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.9E-10162228No hitNo description
SuperFamilySSF579591.29E-10162213No hitNo description
CDDcd147031.49E-22163212No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MKEEDEEENR EPCVSPMQDH QGVPISSSSL STSQSTHASS MSLSLSRGTH RRAHSELSLP  60
LPHDLQTRVP NSSECDDEEE EEDFFSTYMD LEKLGPVQGE AKCSEISGFP ANAGSFKPEM  120
GRRGHRHSNS VDGSALFGEV GTEVKKAMPP EKLAELAALD PKRAKRILAN RQSAARSKER  180
KARYISELER KVQTLQTEAT TLSAQLTLFQ RDTNGLSTEN TMLKQQLQEM ERQAQVRDAL  240
NEALRQEVQR LKIATGEITP NGRENFNLGM QQMPTNHPPF FPNSHPSSIH PVQFQQFQPS  300
QQPSLSNHHQ LRALSLSDIL QQDSLGLMQG LDISRSSPLV KSEGSSVSAS ESSSTF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00303DAPTransfer from AT2G40620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006842469.30.0transcription factor RF2b
SwissprotQ6S4P49e-90RF2B_ORYSJ; Transcription factor RF2b
TrEMBLW1P8Z80.0W1P8Z8_AMBTC; Uncharacterized protein
STRINGERN041440.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.16e-73bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]
  5. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]