PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00077.87
Common NameAMTR_s00077p00103580, LOC18432333
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family WRKY
Protein Properties Length: 334aa    MW: 37208 Da    PI: 6.0542
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00077.87genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY811.2e-25141201259
                                              --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                              dDgy+WrKYGqK++ ++++prsY+rCt++   gC + k+v+r +++++++e+tY g H+++
  evm_27.model.AmTr_v1.0_scaffold00077.87 141 DDGYAWRKYGQKDILNANHPRSYFRCTHKndqGCAALKQVQRMDSNQSFFEVTYIGYHTCR 201
                                              8***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081119.933135198IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.0E-26136202IPR003657WRKY domain
SuperFamilySSF1182901.96E-24138201IPR003657WRKY domain
SMARTSM007745.3E-37140202IPR003657WRKY domain
PfamPF031061.4E-24141201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDDLNRKRVE GNDYPAVFSR KRAIHELSHG LELSKQLLAH LLNSPSQPLS PKLLEENLRK  60
IIRSISAVLA SAGNSGEVSS ANCGNQATGG SYPVRFEGGG NLDFVGGRDG KRTCKRRKVS  120
CKRTMKVLAD NPESPHAAPT DDGYAWRKYG QKDILNANHP RSYFRCTHKN DQGCAALKQV  180
QRMDSNQSFF EVTYIGYHTC RQFMATPPLS LDSTPSRPFF FNFESNSAIE STDYEDNPNS  240
PFSLSSFTTI VRNEERETNH GDIFRHDRVG FASESSEVGE TLQTMESEGT EEVSGINSSS  300
NFPTFDNFSA DIDSVLPFES PFLWSTQEWF ANN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-23141201969OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006842505.10.0probable WRKY transcription factor 46
TrEMBLW1PB050.0W1PB05_AMBTC; Uncharacterized protein
STRINGERN041800.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.17e-29WRKY DNA-binding protein 46
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]