PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00078.140

Common Name

AMTR_s00078p00156890, LOC18432010

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

NF-YC

Protein Properties

Length: 129aa MW: 14199.6 Da PI: 10.9679

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00078.140	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	40.3	6.9e-13	8	86	21	98
NF-YC 21 lPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifd 90 +P r+kki+k d+d+k++ +ea l+s a lf+ +l+ s a e+kr+tl + aav+ + + evm_27.model.AmTr_v1.0_scaffold00078.140 8 FPPGRVKKIVKLDKDIKKVNSEALFLISSATSLFLQHLAESSAKVAMEKKRKTLGLEHLRAAVKGHVpTRV 78 7889***********************************************************96552678 PP NF-YC 91 flvdivpr 98 fl d p+ evm_27.model.AmTr_v1.0_scaffold00078.140 79 FLADSLPK 86 99999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.6E-19	7	71	IPR009072	Histone-fold
SuperFamily	SSF47113	5.69E-16	7	72	IPR009072	Histone-fold
Pfam	PF00808	9.3E-17	8	70	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MADSAPVFPP GRVKKIVKLD KDIKKVNSEA LFLISSATSL FLQHLAESSA KVAMEKKRKT 60 LGLEHLRAAV KGHVPTRVFL ADSLPKPLAK EKRLKRERGG ARAEKELHSG ERRIEDFFKK 120 QGPGTDMG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006842184.1	1e-86	chromatin accessibility complex protein 1
TrEMBL	W1P858	3e-85	W1P858_AMBTC; Uncharacterized protein
STRING	ERN03859	4e-86	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP9472	12	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43250.1	2e-25	nuclear factor Y, subunit C13

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00078.140
Entrez Gene	18432010

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]