PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00078.9

Common Name

AMTR_s00078p00029420, LOC18431882

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

YABBY

Protein Properties

Length: 222aa MW: 24562 Da PI: 8.4187

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00078.9	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	238	2.1e-73	16	193	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas...qllaaeshldeslkeell 72 sse+vCy+ CnfCntilavsvP +slfkvvtvrCGhCt+llsvn+a l++a +l+++ + + evm_27.model.AmTr_v1.0_scaffold00078.9 16 PSSEHVCYLPCNFCNTILAVSVPCSSLFKVVTVRCGHCTNLLSVNMAAVLhapSLTPAPANLQHDQLLRNQ 86 689****************************************99988444578999999998766655 PP YABBY 73 eelkveeen...lksnvekeesastsvssekl......senedeevprvppvirPPekrqrvPsaynrfik 134 +++++ n + ++++ ++s+s++ ++ + ++++ e + v+rPPekrqrvPsaynrfik evm_27.model.AmTr_v1.0_scaffold00078.9 87 SLTGSHGYNrmmMMMTTMDSSSTSNNFNHDDInnkvliPNESIAEKEERTVVNRPPEKRQRVPSAYNRFIK 157 5555554440003333333334443333333366666744444444445679*************** PP YABBY 135 eeiqrikasnPdishreafsaaaknWahfPkihfgl 170 eeiqrikasnPdishreafs+aaknWahfP+ihfgl evm_27.model.AmTr_v1.0_scaffold00078.9 158 EEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 193 ********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.1E-73	17	193	IPR006780	YABBY protein
SuperFamily	SSF47095	1.7E-8	134	187	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.3E-5	141	187	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MSNCNSSINV TSSPSPSSEH VCYLPCNFCN TILAVSVPCS SLFKVVTVRC GHCTNLLSVN 60 MAAVLHAPSL TPAPANLQHD QLLRNQSLTG SHGYNRMMMM MTTMDSSSTS NNFNHDDINN 120 KVLIPNESIA EKEERTVVNR PPEKRQRVPS AYNRFIKEEI QRIKASNPDI SHREAFSTAA 180 KNWAHFPHIH FGLMLDTTKK QPKLDQGSGK HLMNQAAVCI E*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006842053.1	1e-165	putative axial regulator YABBY 2 isoform X2
Swissprot	Q8GW46	1e-64	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	W1P736	1e-164	W1P736_AMBTC; Uncharacterized protein
STRING	ERN03728	1e-165	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2210	12	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	5e-65	YABBY family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00078.9
Entrez Gene	18431882

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]