PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00079.14
Common NameAMTR_s00079p00050740
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family FAR1
Protein Properties Length: 424aa    MW: 49619.4 Da    PI: 7.449
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00079.14genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.11.8e-1545137189
                                     FAR1   1 kfYneYAkevGFsvrkskskkskrng.eitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvk 69 
                                              +fY+++Ak  GFs+r++++  ++ +g  +t+r +vC k g+ ++++  ++k +r r+++r++C a + + 
  evm_27.model.AmTr_v1.0_scaffold00079.14  45 EFYKSFAKAWGFSLRRQQTIGKEGDGnGTTRRYYVCHKDGHLTNKELFANKGERDRSSKRCNCGADMSIA 114
                                              6****************99877544414888999**********99999********************9 PP

                                     FAR1  70 kek...dgkwevtkleleHnHel 89 
                                              k      + w+v ++++  nH++
  evm_27.model.AmTr_v1.0_scaffold00079.14 115 KVMdydISYWRVVTFVNLRNHDV 137
                                              876566789************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-1245137IPR004330FAR1 DNA binding domain
PfamPF105514.6E-24252345IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
METPPNETML VEGFVSIVEN PLERVPSDVV PYHEKIFSSH DGAYEFYKSF AKAWGFSLRR  60
QQTIGKEGDG NGTTRRYYVC HKDGHLTNKE LFANKGERDR SSKRCNCGAD MSIAKVMDYD  120
ISYWRVVTFV NLRNHDVLEP QVRFLPAYRN ISESYKLHIQ QFSKVGICVR DMMWLLEIER  180
NLKPGELPFL DKDMYNFVCA TNNANRDNDA HILLTKYKQI KYDFTVREDN RLEHIVWSHG  240
SCSHAYEIFG DVVVFNTTYR SNGYSMPFGI WVGVNNHGDT CLFGCVLLRD ERVQSFSWAM  300
KTFLGLMNGT MSQTILTDQD LAHKVAIYKE LPNTKHAFCI WHLLSKLSGW FSLFLCKRYN  360
EFDTDFYKLY NHESIEDFEE GWHALVNKFT LHSNRHINNM WNLKEFWALP YLRSHFFTGM  420
KTT*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006842272.20.0protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY661e-140FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLW1P2690.0W1P269_AMBTC; Uncharacterized protein
STRINGERN039470.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.11e-143FAR1-related sequence 11
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]