PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00079.56

Common Name

AMTR_s00079p00137860, LOC18432141

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

bHLH

Protein Properties

Length: 280aa MW: 30789.4 Da PI: 5.9807

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00079.56	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.8	1.9e-08	177	224	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + k + a +L + ++Y++sLq evm_27.model.AmTr_v1.0_scaffold00079.56 177 SHSLAERVRREKINERMRCLQDLVPGC----YKTMGMAVMLDEIINYVQSLQ 224 8***********************9....35599999*******9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.31E-16	171	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.03E-11	171	228	No hit	No description
PROSITE profile	PS50888	15.853	173	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.9E-17	173	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-5	177	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.0E-9	179	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MGDLQSQYCN NLRPPFPLMD IGDSGFELLN QYPEFNAILL ENPSLSNLQS LIGSCNELGL 60 MHQGSVHQQE VQMGSGFSGE SFSNGFLGSN CEELPKVQAN SQSSSALKYK NLENLEKDIR 120 GKKRKAGSAS ESSSEDKSPA NRKKGKCGSK SNSSERGGEK PNEVIHVRAR RGQATDSHSL 180 AERVRREKIN ERMRCLQDLV PGCYKTMGMA VMLDEIINYV QSLQHQVEFL SMKLTAASSL 240 FDFSLDTDAI EAPNGTNSWE VPDVERVVRE GYGGLTSFH*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006842314.1	0.0	transcription factor bHLH75
Swissprot	Q8GWK7	1e-51	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	W1P8H8	0.0	W1P8H8_AMBTC; Uncharacterized protein
STRING	ERN03989	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18400.1	2e-52	BR enhanced expression 1

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00079.56
Entrez Gene	18432141

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]