PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00080.55

Common Name

AMTR_s00080p00130620

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

Protein Properties

Length: 160aa MW: 18453.4 Da PI: 7.8311

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00080.55	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	31	4.4e-10	48	133	2	75
EEE-..-HHHHT.T-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEE CS B3 2 fkvltpsdvlks.grlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgry 59 k+ltpsd+ + +rl lpk+ +++ ++e++ +l d++gr W++ ++y+k+s++y evm_27.model.AmTr_v1.0_scaffold00080.55 48 HKTLTPSDTEPHlNRLALPKTQVNNQifpllteaeirRVEEEGGLELCAFDKEGRAWNLIFKYWKSSQTY 117 699****9999******777***999966778999********************* PP EE-TTHHHHHHHHT-- CS B3 60 vltkGWkeFvkangLk 75 vl + W ++v ng + evm_27.model.AmTr_v1.0_scaffold00080.55 118 VLIDEWMGMVVRNGWR 133 ********999976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03754	9.8E-9	31	127	IPR005508	B3 domain-containing protein
Gene3D	G3DSA:2.40.330.10	8.0E-16	43	133	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.75E-13	45	144	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.03E-8	49	158	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MKMKMKEEKE EDRRNLLMLA ECACNVSRGK WLATMLQLGA QALQPVCHKT LTPSDTEPHL 60 NRLALPKTQV NNQIFPLLTE AEIRRVEEEG GLELCAFDKE GRAWNLIFKY WKSSQTYVLI 120 DEWMGMVVRN GWRSHTDALT VWCFRHGFNG SLCFVILNH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	W1P4X4	1e-116	W1P4X4_AMBTC; Uncharacterized protein
STRING	ERN04942	1e-116	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.2	2e-13	B3 family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00080.55

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]