PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00081.38
Common NameAMTR_s00081p00108570
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C3H
Protein Properties Length: 346aa    MW: 38720.3 Da    PI: 8.4105
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00081.38genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.81.8e-08151173426
                                              ---SGGGGTS--TTTTT-SS-SS CS
                                  zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                              ++C+ ++ +  C+yGdrC+F H+
  evm_27.model.AmTr_v1.0_scaffold00081.38 151 RICKKYYNGEVCSYGDRCNFVHD 173
                                              79******66************7 PP
2zf-CCCH36.67.4e-12234259126
                                              --S---SGGGGTS--TTTTT-SS-SS CS
                                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                              +kt+ C+ +  tG C++G++C+FaHg
  evm_27.model.AmTr_v1.0_scaffold00081.38 234 WKTRMCNKWESTGSCPFGEKCHFAHG 259
                                              8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.22E-667101IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-46996IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-1269103IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1926997IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-7147173IPR000571Zinc finger, CCCH-type
SMARTSM003560.018149174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-7149173IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-6151173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.765152175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-17230264IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-10230264IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5233260IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.784233261IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8234259IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MNPPSELWPP FSRNHPIMWP TDEDFEPQNP NPNFHPSKKL RLSFSFGDPN PIDPFPSRPR  60
GNPSYGRIFF KTKLCTRFQQ GNCPYTPNSC NYAHGVDDLR KPPPNWQQIV DSGASSAPLP  120
LFPFREEPTL PLPTPPQLLT WQENQRLHRL RICKKYYNGE VCSYGDRCNF VHDDLGRSRE  180
SLAISIGTNS NSGNGGSHVF ESLSNFSKKP VGLNATEGGN GGELNGSNLK PMFWKTRMCN  240
KWESTGSCPF GEKCHFAHGA AELQKYGVVM DTDIENSGLT PTSKPSHPST GVKNTSTLRR  300
SCELGQGQRG LSKWKGPEKI NRIYADWIDD NEWEHTARAQ VAEKA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020521981.10.0zinc finger CCCH domain-containing protein 12 isoform X2
TrEMBLW1P9Y10.0W1P9Y1_AMBTC; Uncharacterized protein
STRINGERN045090.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP20451737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.12e-54C3H family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]