PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00084.1
Common NameAMTR_s00084p00025760
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family FAR1
Protein Properties Length: 95aa    MW: 10636.8 Da    PI: 4.8491
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00084.1genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR126.52.1e-085393243
                                    FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkree 43
                                            fYn+YA++ GF++  ++ kk k+n+   ++++vC ke kr++
  evm_27.model.AmTr_v1.0_scaffold00084.1 53 FYNAYAQRRGFNIGLDRPKKDKDNK-LWMQDYVCPKESKRDP 93
                                            9****************99996666.99**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-55393IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MNIIGEDGGS SSGDIVGCDN IIATRDGKDN EGGHQKDLFV GLNFEFEDVA YLFYNAYAQR  60
RGFNIGLDRP KKDKDNKLWM QDYVCPKESK RDPK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020530408.11e-16LOW QUALITY PROTEIN: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLW1P3R45e-63W1P3R4_AMBTC; Uncharacterized protein
STRINGERN022748e-64(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.15e-07FAR1-related sequence 12
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]