PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00084.30
Common NameAMTR_s00084p00111140
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 145aa    MW: 16416.3 Da    PI: 10.1031
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00084.30genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.3e-07105129730
                                              HHHHHHHHHHHHHHHHHHCTSCC.C CS
                                      HLH   7 erErrRRdriNsafeeLrellPk.a 30 
                                               +Er+RR+++N+++  Lr+l+Pk  
  evm_27.model.AmTr_v1.0_scaffold00084.30 105 VAERKRRKKLNERLYGLRSLVPKiT 129
                                              68********************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.41E-595131No hitNo description
Gene3DG3DSA:4.10.280.105.3E-798130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.55698144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-798132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-5105129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MLGSRQKDFH HHPPWTGVPS PSDWGSYGQQ QLRNNNILFD GFADSMLSDD MMKPPISFPN  60
LKSTSSSSQV KQEGERRGDS ISDCNEDDDE QKGRSGRKHQ SKNLVAERKR RKKLNERLYG  120
LRSLVPKITK AGQHDNPTPS LFFF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106113ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7548011e-167KF754801.1 Amborella trichopoda chromosome III mitochondrion, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006840628.33e-91transcription factor ABORTED MICROSPORES
TrEMBLW1P3141e-102W1P314_AMBTC; Uncharacterized protein
STRINGERN023031e-103(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.15e-09bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]