PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00085.9
Common NameAMTR_s00085p00032940
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family YABBY
Protein Properties Length: 212aa    MW: 23275.3 Da    PI: 7.16
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00085.9genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY230.93.2e-71121775170
                                   YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaa.eshldeslkeellee 74 
                                             + seq+Cyv+CnfC+t+lavsvP +slfk+vtvrCGhCt++lsv+ +   + +aa + hl++++  +  ++
  evm_27.model.AmTr_v1.0_scaffold00085.9  12 TPSEQLCYVHCNFCDTVLAVSVPCSSLFKMVTVRCGHCTNVLSVDTRGLLHPTAAtQLHLGHAFFSPTPHN 82 
                                             679********************************************999877661569****99987777 PP

                                   YABBY  75 lkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnP 145
                                             l +e +  +s     +  +t  ++ + s+  +e+ +   pv rPPekrqrvPsaynrfikeeiqrika+nP
  evm_27.model.AmTr_v1.0_scaffold00085.9  83 LLDECSPPSSLLLD-HPLMTPSNTGSASTRLQENEALHSPVSRPPEKRQRVPSAYNRFIKEEIQRIKAGNP 152
                                             76665555544443.33333333333344444444445779****************************** PP

                                   YABBY 146 dishreafsaaaknWahfPkihfgl 170
                                             di+hreafs+aaknWahfP+ihfgl
  evm_27.model.AmTr_v1.0_scaffold00085.9 153 DITHREAFSTAAKNWAHFPHIHFGL 177
                                             ***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.7E-7013177IPR006780YABBY protein
SuperFamilySSF470951.03E-7122171IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.8E-4126169IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MSSSSSFAFH PTPSEQLCYV HCNFCDTVLA VSVPCSSLFK MVTVRCGHCT NVLSVDTRGL  60
LHPTAATQLH LGHAFFSPTP HNLLDECSPP SSLLLDHPLM TPSNTGSAST RLQENEALHS  120
PVSRPPEKRQ RVPSAYNRFI KEEIQRIKAG NPDITHREAF STAAKNWAHF PHIHFGLMAD  180
QSIKKTNMQD GDDVLITESF FTAANMGVTP Y*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1681130.0AB168113.1 Amborella trichopoda AmbF2 mRNA for filamentous flower like protein, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006840962.31e-157protein YABBY 4
SwissprotQ01JG21e-75YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF01e-75YAB5_ORYSJ; Protein YABBY 5
TrEMBLW1NYE01e-156W1NYE0_AMBTC; Uncharacterized protein
STRINGERN026371e-157(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP46851123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.12e-73YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  3. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]