PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00086.120
Common NameAMTR_s00086p00182350
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ARR-B
Protein Properties Length: 622aa    MW: 68969.3 Da    PI: 6.5627
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00086.120genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.92.2e-28209262155
                                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                               kpr++W+ eLH++Fv av+qL G ekA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  evm_27.model.AmTr_v1.0_scaffold00086.120 209 KPRVVWSIELHQQFVAAVNQL-GLEKAVPKRILDLMNVQGLTRENVASHLQKYRL 262
                                               79*******************.********************************8 PP
2Response_reg78.91.7e-26251331109
                                               EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHH CS
                              Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeire 67 
                                               vl vdD+p+ ++l++ +l++ +y +v+++ +++ al++l+e++  +Dl++ D+ mp+mdG++ll+    
  evm_27.model.AmTr_v1.0_scaffold00086.120  25 VLAVDDDPTCLRLIEALLKRCQY-NVTTTGQARTALKMLRENRdkFDLVISDVHMPDMDGFKLLELVGL 92 
                                               799********************.***************999889*******************87754 PP

                                               HTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                              Response_reg  68 eepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                                                e++lp+i+++a ++++ + + +  Ga d+l Kp+ +eel +
  evm_27.model.AmTr_v1.0_scaffold00086.120  93 -EMDLPVIMLSAISDPSAVMKGITHGACDYLLKPVRIEELKN 133
                                               .558***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.5E-1581604IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23002.6E-4222164No hitNo description
SuperFamilySSF521729.96E-3622147IPR011006CheY-like superfamily
SMARTSM004482.4E-3323135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.06324139IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-2325133IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.33E-2826138No hitNo description
SuperFamilySSF466893.94E-19206266IPR009057Homeodomain-like
PROSITE profilePS5129411.281206265IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.4E-30207267IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-24209262IPR006447Myb domain, plants
PfamPF002495.3E-7211261IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MTAEENQKGL REDERKDRFP IGMRVLAVDD DPTCLRLIEA LLKRCQYNVT TTGQARTALK  60
MLRENRDKFD LVISDVHMPD MDGFKLLELV GLEMDLPVIM LSAISDPSAV MKGITHGACD  120
YLLKPVRIEE LKNIWQHVVR KRKVEPKDPN VTKQGGEDAE KLRHGGPITN GLADRNSKLS  180
RKRKDQNEED DDDYDENAHE SDDPSTQKKP RVVWSIELHQ QFVAAVNQLG LEKAVPKRIL  240
DLMNVQGLTR ENVASHLQKY RLYLKRISTQ QGNMAAALGG MGVLGRPNNS SGSLGLSGLP  300
SSGVIQVGHA HNSTNSLNNF SKFHQMNFSK NLQSLPPSSL ELEQFQHKQF LSRLGDLATP  360
FEDSLTFPVS QQETNFGGCS NNGSGPNSFN NPFLNDPNNS LMPQVIQNRH KLETQPDPSV  420
GLGAINQDSF EVNGAWHSSA PSMVFSPNPL PVSLPLNTDD ISLNNVKTNN MLLRENGFGG  480
QSINYGLKQE WEVPHKQAYA HDPTLLLGSQ LSPSLPNENL IMPIGQNQEQ GQINGMSDLK  540
MNLVSKEQFG HSFPSVVPHS GSEQSMAGSQ MKFQNVFSSD GFPLVDDIMN VMVKQMSIQC  600
CFGMLMLIKS ILSRRLVITL L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-24205268164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020520897.10.0two-component response regulator ORR24 isoform X1
SwissprotA2X1N21e-129ORR24_ORYSI; Two-component response regulator ORR24
SwissprotQ6H8051e-129ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLW1P5D20.0W1P5D2_AMBTC; Two-component response regulator
STRINGERN028640.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-104response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]