PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00087.6
Common NameAMTR_s00087p00039380
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB_related
Protein Properties Length: 171aa    MW: 19582.1 Da    PI: 4.9541
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00087.6genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.1e-0810342348
                                            -HHHHHHHHTTTS-HHHHHHHHHHHT CS
                         Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                                            +W+ I+++++ gRt++++k++w+++l
  evm_27.model.AmTr_v1.0_scaffold00087.6 10 RWAQISNYLP-GRTDNEIKNYWNSHL 34
                                            4*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.828138IPR017930Myb domain
CDDcd001672.08E-7634No hitNo description
SuperFamilySSF466894.81E-8941IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-121035IPR009057Homeodomain-like
PfamPF002496.7E-71034IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MPIFVHLFIR WAQISNYLPG RTDNEIKNYW NSHLKKGAWK KEQIEKSWTL KAQERTPSNS  60
IVPEEQHIIY EEPKLFQGEV GPNYNFNNLY FGDSQVVLNE NSNIYNQPLG GVVHENHLIA  120
MTPWVPPDDG PLQMESIIFP QLNPLDVFHP GMSMGLQGLE AYNSLNNGEF *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006840883.21e-115transcription factor WER
TrEMBLW1P3P91e-121W1P3P9_AMBTC; Uncharacterized protein
STRINGERN025581e-122(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.26e-12myb domain protein 60
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]