PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00095.55
Common NameAMTR_s00095p00094910
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 206aa    MW: 22089.7 Da    PI: 4.9077
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00095.55genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-182372255
                                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                              y+GVr++k  g+Wv+eIr+p   gk++r++lg+f t+e+Aa a++ a+++l+g
  evm_27.model.AmTr_v1.0_scaffold00095.55 23 IYRGVRQRK-GGKWVSEIREP---GKSTRIWLGTFATPEMAAIAYDVAALALKG 72
                                             69******9.9*********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.01E-292283No hitNo description
PfamPF008471.3E-122272IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-192383IPR016177DNA-binding domain
SMARTSM003801.1E-302387IPR001471AP2/ERF domain
PROSITE profilePS5103221.6542381IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-272383IPR001471AP2/ERF domain
PRINTSPR003671.6E-82435IPR001471AP2/ERF domain
PRINTSPR003671.6E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MNPSNLPEST SGSGTAKSGR HPIYRGVRQR KGGKWVSEIR EPGKSTRIWL GTFATPEMAA  60
IAYDVAALAL KGKHGTIFNF PDSVPDLPFP ASNSPFDIRV VAASTAEAVS LSRKSDSKLQ  120
KTDSRTTAQT TSSDPKVTGD SSKNPTFGVL GNSDMTEFMD EELIFDMPNL LVNMAEGMML  180
SPPRLDEGEG GGCGDDNLWN YKEEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-141984366ATERF1
3gcc_A4e-141984366ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011620445.11e-120ethylene-responsive transcription factor ERF024
TrEMBLW1NT591e-149W1NT59_AMBTC; Uncharacterized protein
STRINGERM981551e-150(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.11e-39ERF family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]