PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00099.112
Common NameAMTR_s00099p00127980, LOC18427795
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 566aa    MW: 63392.7 Da    PI: 6.7063
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00099.112genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407e-13412458455
                                               HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                                       HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                               +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  evm_27.model.AmTr_v1.0_scaffold00099.112 412 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITDLQ 458
                                               799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-5148227IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.085408457IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-18411470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.36E-14411462No hitNo description
Gene3DG3DSA:4.10.280.102.0E-18412471IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-10412458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-17414463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MENYGKFWKD EDRAMVEAVL GPQAFEYLTT SNNVLSEGVL TSISDGSLQQ KLCDLVEKST  60
PSINWTYAIF WQFSRSKTND LVLGWGDGYC REPKEGEGEE GPINRPDQKM RKRVLQRLHT  120
FFGGSEEDNY AVGLDKISDT EMFYLTSMYY SFPRGVGLPG KALTAGKPIW ISDPESCFAH  180
YSSRSYLAKC AGFKTLVCFP IETGVLELGS VNSIPEYQSI LHEIRSILTG VYSSNPQASA  240
SYPKIFGHDL RLGRDKLQHT GNELLAAKVE EKEYPNVLGP PQERVSLPMM GGKKEMSWNQ  300
VHNVDSGEIY KPQAFQKHGG GILITNSENV YGKYSNGGNS VGDNNRTKLF PQQRQIDFTG  360
ASRSPVLMPV NHHMGALESE LSDKEERAPQ ADERRPRKRG RKPANGREEP LNHVEAERQR  420
REKLNQRFYA LRAVVPNISK MDKASLLGDA ISYITDLQKK LRDMEAEKEK QASSSEAKAA  480
DDQKLGLVPE IDIQTVNEEL IICLSCPLDE HPIAKVVETL REMQVTVQES RVCTREDSVL  540
HTFVIKPHVG TEQLLKGKLN AALSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A9e-32472288192Transcription factor MYC3
4rqw_B9e-32472288192Transcription factor MYC3
4rs9_A9e-32472288192Transcription factor MYC3
4yz6_A9e-32472288192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1393401RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006836904.10.0transcription factor bHLH13
SwissprotA0A3Q7ELQ21e-164MTB1_SOLLC; Transcription factor MTB1
TrEMBLW1NVY00.0W1NVY0_AMBTC; Uncharacterized protein
STRINGERM997570.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25311123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.11e-115ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  3. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  4. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]