PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00099.14
Common NameAMTR_s00099p00029210, LOC18427694
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 196aa    MW: 21548.1 Da    PI: 7.3832
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00099.14genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.32.9e-162273156
                                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                                             ++ykG+r++  +g+Wv+e+r p+    +  r +lg++  ae Aa a++ a+++l+g+
  evm_27.model.AmTr_v1.0_scaffold00099.14 22 PRYKGIRQRQ-WGKWVSEVRIPK----TgERLWLGTYNNAEAAATAHDTAMLCLRGP 73
                                             68*****999.**********95....35**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.0E-102272IPR001471AP2/ERF domain
CDDcd000183.76E-252284No hitNo description
PROSITE profilePS5103220.852383IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-162383IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-252384IPR001471AP2/ERF domain
SMARTSM003802.0E-232389IPR001471AP2/ERF domain
PRINTSPR003671.0E-82435IPR001471AP2/ERF domain
PRINTSPR003671.0E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MEQPNACRKT RLHRSKSDPC KPRYKGIRQR QWGKWVSEVR IPKTGERLWL GTYNNAEAAA  60
TAHDTAMLCL RGPIVAPKYL NFPNFSIEDS NLPNGSSNFL AGNSNFSMVG SYMNRSPTSI  120
KAAARDAGAA ADAELERRLR ETGIGCAVDS GTHGERTPLS NAPLSVEEDY LEDYLRSKGE  180
GDGLTFSIDD IEIYM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1223841473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006836806.11e-145ethylene-responsive transcription factor ERF020
TrEMBLW1NYC11e-144W1NYC1_AMBTC; Uncharacterized protein
STRINGERM996591e-144(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22200.17e-17ERF family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]