PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00099.164
Common NameAMTR_s00099p00163300
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NAC
Protein Properties Length: 323aa    MW: 37022.3 Da    PI: 7.1276
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00099.164genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.74.9e-49131401128
                                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya 69 
                                               l+pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+++  +ekew+f+++rd+ky+
  evm_27.model.AmTr_v1.0_scaffold00099.164  13 LMPGFRFHPTEEELVEFYLRRKVEGKRFSV-ELITFLDLYRYDPWELPAHAVIGEKEWFFYVPRDRKYR 80 
                                               689***************************.89***************8777899************** PP

                                       NAM  70 tgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                               +g+r+nr+t+sgyWkatg d+ +  + +++ +glkktLvfy+g+apkg++++W+m+eyrl
  evm_27.model.AmTr_v1.0_scaffold00099.164  81 NGDRPNRVTTSGYWKATGADRMIRGErSSRPIGLKKTLVFYSGKAPKGTRSSWIMNEYRL 140
                                               ***********************99857788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.42E-5511169IPR003441NAC domain
PROSITE profilePS5100555.40813170IPR003441NAC domain
PfamPF023655.2E-2515140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MNDAEKEGGE EVLMPGFRFH PTEEELVEFY LRRKVEGKRF SVELITFLDL YRYDPWELPA  60
HAVIGEKEWF FYVPRDRKYR NGDRPNRVTT SGYWKATGAD RMIRGERSSR PIGLKKTLVF  120
YSGKAPKGTR SSWIMNEYRL PQHETTSADH NHHIFQKQKV EISLCRVYKR AGGEDLSTIP  180
VPRFPTRLGN PSGRTALDEN TRAIDHASDE SLQFGGGDAT PSSSSSSSTR VLHHQYNNLD  240
NSMVTPPCND TLLTLMAPTT TVAEELHRLV EYQQIYVQAN QSQTSQSLLN TFSSSLPNLS  300
DKLWEWNPVP EPSRDYYHFK EQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-541317020168NAC domain-containing protein 19
3swm_B3e-541317020168NAC domain-containing protein 19
3swm_C3e-541317020168NAC domain-containing protein 19
3swm_D3e-541317020168NAC domain-containing protein 19
3swp_A3e-541317020168NAC domain-containing protein 19
3swp_B3e-541317020168NAC domain-containing protein 19
3swp_C3e-541317020168NAC domain-containing protein 19
3swp_D3e-541317020168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006836956.20.0NAC domain-containing protein 35
SwissprotQ9ZVP89e-96NAC35_ARATH; NAC domain-containing protein 35
TrEMBLW1NYP60.0W1NYP6_AMBTC; Uncharacterized protein
STRINGERM998090.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-100NAC domain containing protein 35
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  4. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]