PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00099.26
Common NameAMTR_s00099p00039760
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 202aa    MW: 22727.4 Da    PI: 5.2426
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00099.26genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-194492355
                                      AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                             y+GVr++k +g+Wv+eIr+p   gk+ r++lg+f t+e+Aa a++aa+++l+g
  evm_27.model.AmTr_v1.0_scaffold00099.26 44 YRGVRRRK-WGKWVSEIREP---GKKSRIWLGSFETPEMAASAYDAAALSLKG 92
                                             9****998.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.5E-3243101IPR001471AP2/ERF domain
PROSITE profilePS5103223.70943100IPR001471AP2/ERF domain
SMARTSM003808.7E-3643106IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-2243100IPR016177DNA-binding domain
PfamPF008477.7E-134492IPR001471AP2/ERF domain
PRINTSPR003671.0E-124455IPR001471AP2/ERF domain
CDDcd000189.89E-1751101No hitNo description
PRINTSPR003671.0E-1282102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MDFFNTECSQ NLTENRIEKA GAETSCTDKK QSLTRDYREE RRAYRGVRRR KWGKWVSEIR  60
EPGKKSRIWL GSFETPEMAA SAYDAAALSL KGRSARLNFP EFADKLPKPL TKDPKDIRSV  120
ALEAARSKSR EKELSGENQS FPASFPVIQA PINQYSGEFP VGSPGMWSDL AEALLLSPPV  180
FVGEESDEEE KDEGWLWSNS I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-16401011173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020518969.11e-145ethylene-responsive transcription factor ERF039
SwissprotQ9LYD31e-34DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLW1NRT21e-144W1NRT2_AMBTC; Uncharacterized protein
STRINGERM996711e-145(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.17e-21ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]