PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00101.78
Common NameAMTR_s00101p00100870, LOC18427104
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NF-YC
Protein Properties Length: 280aa    MW: 31048.2 Da    PI: 4.8669
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00101.78genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC58.91.1e-186861898
                                    NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89
                                             ++++P +rikki++adedv +i+  +P l+ska elf+ +l  +++  + +   +t+    ++++v++ ++f
  evm_27.model.AmTr_v1.0_scaffold00101.78  6 DTRFPASRIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDKTYEITLQRGAKTMSSLHLKQCVQSYNVF 77
                                             5789******************************************************************** PP

                                    NF-YC 90 dflvdivpr 98
                                             dfl div +
  evm_27.model.AmTr_v1.0_scaffold00101.78 78 DFLRDIVNK 86
                                             ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.9E-25372IPR009072Histone-fold
PfamPF008083.3E-18871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471136.01E-201888IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MRKKLDTRFP ASRIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDKT YEITLQRGAK  60
TMSSLHLKQC VQSYNVFDFL RDIVNKVPDL GGSDAAGDDR TASKRRKAVD DEDNDSDEDS  120
KRTRTEAPQG GSRGRGRGRG RGRGGRGGRA HEKDSGAHAE KCEDDPTISP QHSEKPRAER  180
LEEETEAKQD PSVHVVRNFD LNLDLDENGD MASGSGSVSE PKPKSKPEPE LQPESETEPK  240
HEEYPGWSVS EMKGMTIDHL RLAQLDTKVD DEDYDNEEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A1e-23272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132142RGRGRGRGRGR
2134143RGRGRGRGRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006836223.10.0dr1-associated corepressor isoform X2
TrEMBLW1NQ900.0W1NQ90_AMBTC; Uncharacterized protein
STRINGERM990760.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP21791635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.12e-58nuclear factor Y, subunit C11
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]